Protmotion
PDBS 7: 4IFP:A 5JST:A 3H4Z:A 3H4Z:C 3H4Z:B 4KYC:A
IDENTICAL 3: 4IFP:B 4IFP:C 5JST:B
T-score<0.5 3: 3UV1:A 3UV1:B

Kpax Structure Alignment

Kpax alignment 7 chains 14 npairs representative 5/0
# PDB PDB T-score Rmsd Init End Col. Link
15JST_A3H4Z_A 0.86 0.7023.72 3.61 0.07
23H4Z_C3H4Z_A 0.99 0.93 0.93 0.43 0.60
34IFP_A3H4Z_B 0.85 1.0511.21 4.32 0.06
44KYC_A3H4Z_B 0.90 0.92 9.12 2.76 0.05
54IFP_A3H4Z_C 0.84 1.10 7.80 2.77 0.07
T-score
RMSD T-score
# PDB PDB T-score Rmsd <>
15JST_A3H4Z_B 0.8623.263H4Z_A_5JST_A
24IFP_A3H4Z_A 0.8511.383H4Z_B_4IFP_A
34KYC_A3H4Z_C 0.89 9.853H4Z_C_4IFP_A
45JST_A4IFP_A 0.8714.525JST_A_4KYC_A
53H4Z_B3H4Z_A 0.89 2.693H4Z_A_5JST_A
63H4Z_C3H4Z_B 0.88 2.733H4Z_A_5JST_A
75JST_A3H4Z_C 0.8623.273H4Z_A_5JST_A
84KYC_A4IFP_A 0.90 3.965JST_A_4KYC_A
94KYC_A5JST_A 0.8813.903H4Z_A_5JST_A
Motion 3H4Z_B 4KYC_A
Structures
Normal Mode Anaysis
PCA freq %Var #clst
1 1.997e+04 56.4 4
2 7.133e+03 76.5 4
3 5.835e+03 92.9 3
4 2.177e+03 99.1 3
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Rmsd Dihedral Dihedral2

PCA analysis Dimensions 4
PCA analysis Dimensions 3 4Clustering PCA 1 Clustering PCA 2 Clustering PCA 3 
4KYC_A          KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
3H4Z_B          KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
                ************************************************************

4KYC_A          FWAHDRFGGYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
3H4Z_B          FWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
                *********************  *************************************

4KYC_A          LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKD
3H4Z_B          LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKD
                ************************************************************

4KYC_A          VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKV
3H4Z_B          VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAV
                ********************************************************** *

4KYC_A          NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
3H4Z_B          NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
                ************************************************************

4KYC_A          AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
3H4Z_B          AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
                ************************************************************

4KYC_A          LAAAQTNAAA--------------------------------------------------
3H4Z_B          LAAAQTNAAA--------------------------------------------------
                **********                                                  

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------------------------------------------------
3H4Z_B          ------------------------------------------------------------
                                                                            

4KYC_A          ------------------SGYKMTLLALIKESIPNQAKR----QKFEMQVG---------
3H4Z_B          -----DPIHYDKITEEINKAVDEAVAAIEKSETFDPMKVPDHSDKFERHI-----KGELD
                                  .. . :: *: *..  :  *     :*** ::          

4KYC_A          ----GIRNEQDFKNLRREIIRSAAQ-----------------------------------
3H4Z_B          MRNIQVRGLKQMKRVGDANVKSEDGVVKAHLLVGVHDDVVSMEYDLAYKLGDLHPNTHVI
                     :*. :::*.:    ::*                                      

4KYC_A          ------------------------------------------------------------
3H4Z_B          SDIQDFVVELSLEVSEEGNMTLTSFEVRQFANVVNHIGGLSILDPIFAVLSDVLTAIFQD
                                                                            

4KYC_A          -----------------------
3H4Z_B          TVRAEMTKVLAPAFKKELERNNQ

PDB structures

Target Query Fitted Dowload movie
Citation
Cite images created with the PDB ID and associated publication, NGL Viewer (AS Rose et al. (2018) NGL viewer: web-based molecular graphics for large complexes. Bioinformatics doi:10.1093/bioinformatics/bty419), and RCSB PDB.