Protmotion
PDBS 7: 4IFP:A 5JST:A 3H4Z:A 3H4Z:C 3H4Z:B 4KYC:A
IDENTICAL 3: 4IFP:B 4IFP:C 5JST:B
T-score<0.5 3: 3UV1:A 3UV1:B

Kpax Structure Alignment

Kpax alignment 7 chains 14 npairs representative 5/0
# PDB PDB T-score Rmsd Init End Col. Link
15JST_A3H4Z_A 0.86 0.7023.72 3.61 0.07
23H4Z_C3H4Z_A 0.99 0.93 0.93 0.43 0.60
34IFP_A3H4Z_B 0.85 1.0511.21 4.32 0.06
44KYC_A3H4Z_B 0.90 0.92 9.12 2.76 0.05
54IFP_A3H4Z_C 0.84 1.10 7.80 2.77 0.07
T-score
RMSD T-score
# PDB PDB T-score Rmsd <>
15JST_A3H4Z_B 0.8623.263H4Z_A_5JST_A
24IFP_A3H4Z_A 0.8511.383H4Z_B_4IFP_A
34KYC_A3H4Z_C 0.89 9.853H4Z_C_4IFP_A
45JST_A4IFP_A 0.8714.525JST_A_4KYC_A
53H4Z_B3H4Z_A 0.89 2.693H4Z_A_5JST_A
63H4Z_C3H4Z_B 0.88 2.733H4Z_A_5JST_A
75JST_A3H4Z_C 0.8623.273H4Z_A_5JST_A
84KYC_A4IFP_A 0.90 3.965JST_A_4KYC_A
94KYC_A5JST_A 0.8813.903H4Z_A_5JST_A
Motion 3H4Z_A 5JST_A
Structures
Normal Mode Anaysis
PCA freq %Var #clst
1 6.403e+04 73.3 5
2 1.838e+04 94.3 3
3 3.534e+03 98.3 4
4 9.300e+02 99.4 4
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Rmsd Dihedral Dihedral2

PCA analysis Dimensions 5
PCA analysis Dimensions 3 4Clustering PCA 1 Clustering PCA 2 Clustering PCA 3 
5JST_A          ---EGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
3H4Z_A          KIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDII
                   *********************************************************

5JST_A          FWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
3H4Z_A          FWAHDRFGGYAQSGLLAEITPAAAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKD
                ************************************************************

5JST_A          LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKD
3H4Z_A          LLPNPPKTWEEIPALDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYAAGKYDIKD
                ***************************************************  *******

5JST_A          VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAV
3H4Z_A          VGVDNAGAKAGLTFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSAV
                ************************************************************

5JST_A          NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
3H4Z_A          NYGVTVLPTFKGQPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLG
                ************************************************************

5JST_A          AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
3H4Z_A          AVALKSYEEELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAA
                ************************************************************

5JST_A          LAAAQTNAAA--------------------------------------------------
3H4Z_A          LAAAQTNAAA--------------------------------------------------
                **********                                                  

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ------------------------------------------------------------
                                                                            

5JST_A          ------------------------------------------------------------
3H4Z_A          ---------------------------------------------------------DPI
                                                                            

5JST_A          ------------------------------------------GSQTLVNSLEFLNIQKN-
3H4Z_A          HYDKITEEINKAVDEAVAAIEKSETFDPMKVPDHSDKFERHIGIIDLKGELDMRNIQVRG
                                                          *   * ..*:: *** . 

5JST_A          -------------------------------------------------STLSEIRDIEV
3H4Z_A          LKQMKRVGDANVKSEDGVVKAHLLVGVHDDVVSMEYDLAYKLGDLHPNTHVISDIQDFVV
                                                                  .:*:*:*: *

5JST_A          EVENLRQKKE-----------------KLLGKIANIEQNQLLLEDNLKQI----------
3H4Z_A          ELS-LEVSEEGNMTLTSFEVRQFANVVNHIGGLSILDPIFAVLSDVLTAIFQDTVRAEMT
                *:. *. .:*                 : :* :: ::    :*.* *. *          

5JST_A          ----------------
3H4Z_A          KVLAPAFKKELERNNQ

PDB structures

Target Query Fitted Dowload movie
Citation
Cite images created with the PDB ID and associated publication, NGL Viewer (AS Rose et al. (2018) NGL viewer: web-based molecular graphics for large complexes. Bioinformatics doi:10.1093/bioinformatics/bty419), and RCSB PDB.