Protmotion
PDBS 5: 2VSN:A 2VSY:A 2VSY:B 2JLB:A
IDENTICAL 2: 2VSN:B 2JLB:B
T-score<0.5 0:

Kpax Structure Alignment

Kpax alignment 5 chains 5 npairs representative 3/0
# PDB PDB T-score Rmsd Init End Col. Link
12VSN_A2VSY_A 0.98 1.00 1.24 0.88 0.13
22VSY_B2VSY_A 0.94 1.22 1.88 0.32 0.15
32VSY_B2JLB_A 0.96 1.15 1.69 0.79 0.15
T-score
RMSD T-score
# PDB PDB T-score Rmsd <>
12VSN_A2VSY_B 0.97 1.562JLB_A_2VSY_B
22VSY_A2JLB_A 0.99 1.042VSY_A_2VSN_A
Motion 2VSY_A 2VSY_B
Structures
Normal Mode Anaysis
PCA freq %Var #clst
1 2.154e+02 92.3 3
2 1.368e+01 98.2 5
3 2.109e+00 99.1 3
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Rmsd Dihedral Dihedral2

PCA analysis Dimensions 3
PCA analysis Dimensions 2 3Clustering PCA 1 Clustering PCA 2 
2VSY_B          QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL
2VSY_A          QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL
                ************************************************************

2VSY_B          QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD
2VSY_A          QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCD
                ************************************************************

2VSY_B          WRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV
2VSY_A          WRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAPTRV
                ************************************************************

2VSY_B          RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQA
2VSY_A          RSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRLAQA
                ************************************************************

2VSY_B          STLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSG
2VSY_A          STLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSG
                ************************************************************

2VSY_B          APWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQGVVL
2VSY_A          APWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQGVVL
                ************************************************************

2VSY_B          CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMP
2VSY_A          CCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMP
                ************************************************************

2VSY_B          KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG
2VSY_A          KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLG
                ************************************************************

2VSY_B          LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA
2VSY_A          LDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQALA
                ************************************************************

2VSY_B          RRHGWLG
2VSY_A          RRHGWLG
                *******

PDB structures

Target Query Fitted Dowload movie
Citation
Cite images created with the PDB ID and associated publication, NGL Viewer (AS Rose et al. (2018) NGL viewer: web-based molecular graphics for large complexes. Bioinformatics doi:10.1093/bioinformatics/bty419), and RCSB PDB.