Protmotion
PDBS 5: 2VSN:A 2VSY:A 2VSY:B 2JLB:A
IDENTICAL 2: 2VSN:B 2JLB:B
T-score<0.5 0:

Kpax Structure Alignment

Kpax alignment 5 chains 5 npairs representative 3/0
# PDB PDB T-score Rmsd Init End Col. Link
12VSN_A2VSY_A 0.98 1.00 1.24 0.88 0.13
22VSY_B2VSY_A 0.94 1.22 1.88 0.32 0.15
32VSY_B2JLB_A 0.96 1.15 1.69 0.79 0.15
T-score
RMSD T-score
# PDB PDB T-score Rmsd <>
12VSN_A2VSY_B 0.97 1.562JLB_A_2VSY_B
22VSY_A2JLB_A 0.99 1.042VSY_A_2VSN_A
Motion 2VSY_A 2VSN_A
Structures
Normal Mode Anaysis
PCA freq %Var #clst
1 4.397e+01 81.1 3
2 7.687e+00 95.3 4
3 1.517e+00 98.1 6
4 4.014e-01 98.9 3
5 2.090e-01 99.3 3
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Rmsd Dihedral Dihedral2

PCA analysis Dimensions 3
PCA analysis Dimensions 4 5Clustering PCA 1 Clustering PCA 2 Clustering PCA 3 Clustering PCA 4 
2VSN_A          ----AWLMLADAELG-----DTTAGEMAVQR--------PEAVARLGRVRWTQQRHAEAA
2VSY_A          QDFVAWLMLADAELGMG---DTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAA
                    ***********     ***********        *********************

2VSN_A          VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR
2VSY_A          VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR
                ************************************************************

2VSN_A          LCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP
2VSY_A          LCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLAP
                ************************************************************

2VSN_A          TRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL
2VSY_A          TRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTRL
                ************************************************************

2VSN_A          AQASTLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPG
2VSY_A          AQASTLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPG
                ******************************** ***************************

2VSN_A          TSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQG
2VSY_A          TSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQGAFQPSDTSRVVAEPPSRTQCGLPEQG
                ************************************************************

2VSN_A          VVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLV
2VSY_A          VVLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLV
                ************************************************************

2VSN_A          FMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNH
2VSY_A          FMPKLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNH
                ************************************************************

2VSN_A          HLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQ
2VSY_A          HLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFADDFGALLQ
                ************************************************************

2VSN_A          ALARRHGWLGI
2VSY_A          ALARRHGWLG-
                **********

PDB structures

Target Query Fitted Dowload movie
Citation
Cite images created with the PDB ID and associated publication, NGL Viewer (AS Rose et al. (2018) NGL viewer: web-based molecular graphics for large complexes. Bioinformatics doi:10.1093/bioinformatics/bty419), and RCSB PDB.